Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015819880.1_cds_XP_016500205.1_14055
CDS Infomation

[gene=LOC107818682] [db_xref=GeneID:107818682] [protein=pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like] [protein_id=XP_016500205.1] [location=complement(13670..16495)] [gbkey=CDS]
Sequence

ATGGCCTCTTTGAAATTGTCTTTTTATGTGGATAAGTCATGGGAATCCAAGAAACTTAAA
TTTAATGTGAAAGCTTTGAACTTTACTGATTCTAAGTGTTTGGTTCCTTCATTTTTGGGC
TATGGATATGTTGGTGGTGCATTTGTTGTTAACCCCTTTTGTAATTTGAAGCACATTAGA
GTTTCAAGATTAGAAACTGAGGAATTAGAGACTTCTGAGTTGAGTTTATTAGATGGTGAA
AGGGTTGATAATTTTGAAGGTGATTTAGGAAATGAGAGTTTGGTTTCTGAAAGATTAAAT
CTTGGTGGGGTTTCTCAGAAAGGGAAGTTTAATGTTTGGAAGAGATTTAGGAGGGTCAAG
AGGGTAGTGAACAACTCGAAATATAGGTCTAGTTTCAGAGAGAAAGATAGGAATCATGGA
ATGCAAGAAAAAACCAAGATTGTGTTTGATGAAATTAGCGAGGAGAATGTGATAGGTAGC
CTAAATGGGGTTGATTTTGATGTTGGGAATATCGGGTCTGACTCGAGTTTGGAACACTGC
AATGCGATATTGAAACAACTCGAAAGTGGTGACGATGGGAAAGCGTTGAGTTTTTTCCGA
TGGATGCAGAAAAATGGGAAATTAAAGCAAAATGTTACTGCCTATAATTTGATACTCCGT
GTCTTGGGGAGAAGAGGGGACTGGGATGGTGCAGAGGCGATGATTAAGGAAATGAGTCTG
GAGTCGGGTTGTGAGCTTACGTATCAGGTTTTCAATACCCTTATTTATGCTTGCCATAAG
AAAGGGCTTGTGGAGTTGGGTGCTAAGTGGTTCCACATGATGTTGGAGAACAGAATTCAG
CCAAATATTGCGACTTTCGGAATGCTAATGGCTCTCTATCAGAAAGGTTGGAATGTTGAG
GAAGCAGAATTTACATTTTCAAAGATGAGGAGTCTCAAAATTATGTGCCAATCTGCATAT
TCAGCTATGTTGACTATATATACGCGAATGAGATTGTATGATAAAGCAGAAAAAATCATT
GGCTTTTTGCGGGAAGATGAAGTAATTCTGAATCAGGAAAATTGGTTGGTTCTGCTCAAT
GCTTATTGTCAACAAGGCAAGTTAGCTGAGGCTGAGCAGGTCTTAGCTTCAATGAAGCAA
TCTGGTTTTTCGCCAAATATAGTTGCGTACAACACATTGATCACTGGATACGGGAAGATT
TCCAACATGCGTGCTGCACAACGCTTGTTTAGTGACCTTGAAAGAGTTGGAATGGAGCCT
GATGAAACAACTTATAGGTCTATGATTGAAGGGTGGGGCCGTGCAGACAATTATGAGGAG
GCAAGGAGATACTATGTGGAACTGAAAAGACTTGGACACAAACCAAACTCGTCTAATTTG
TACACGATGCTGAATTTACAAGTCAAGCATGGAGATGAAGAGGATGTTGTTAGTACTGTT
GAGGAAATGATGCACTCTGGCAGCGAAAAGTCAACCGTCCTTGGCATTCTTTTGCAAGCA
TACGAGAAGCTTGAATGCGTTCACAAAGTTCCTTCAATTTTGAGAGGTTCTTTATATGAT
CATGTTTTGAGAAACCAGATATCTTGTTCGAGTCTGGTAATGGCTTATGTGGAAAACAGC
ATGATAGATGATGCATTGAAAGTATTACGGGAAAAGCGGTGGGAGGATGCTTTATTTGAG
GACAACTTGTACCATTTATTAATTTGCTCGTGCAAAGATTTGGGCTATCCAGAGAATGCT
GTGAAAGTGTTCGCTTGTATGCCGAAATCTTATAAGCCGAACTTACACATAATATGCACT
ATGATAGACATTTACAGTACAATCAATGATTTTGCTGAAGCTGAAAAGCTTTATCTAATG
TTGAAGAATTCAGATGTTAAACTGGACATGATAACTTTAAGTGTTGTGGTAAGAATGTAT
GTGAAATCTGGAGCTTTAGAAGAAGCCTGCTCTGTGTTGGATGCAATGGAGAAACAAAAG
AATATTGTTCCAGACACATATTTGCTCCGTGATATGCTCCGGATCTACCAGCGATGTGAC
AAGCAGGACAAATTGGCGGATCTTTACTACAAACTTGTGAAAAGAGGAGTCATATGGGAT
CAGGAAATGTACAGCTGTGTCATAAACTGTTGCGCCCGTGCATTGCCAGTTGATGAGCTT
TCGAGGCTGTTTGACGAGATGCTTAAACATGGATTTTTACCCAATACAGTCACCTTCAAT
GTTATGCTTGACGTTTATGGAAAGTCCAGGCTCTTCAAAAGGGCAAGGGAAGTCTTCTCA
ATGGCTAAAAAGCGTGGGTTGGCTGATGTTATCTCTTACAACACTCTCATAGCTGCATAT
GGGAGAAGCAAAGACTTCAAGAATATGTCGTCAACAGTCAAGAAAATGCATTTCAATGGG
TTTTCGGTTTCTCTTGAAGCTTACAATTGTATGTTGGATGCCTATGGGAAAGAAGGACAA
ATGGAGAAATTCCGTAGTATCTTGCAAAGATTGAAGGAATCTGGTCATTCTTCTGATCAT
TACACCTACAATATTATGATAAACATTTATGGTGAGCTCGGGTGGATTGAAGAAGTTGCA
AATGTACTGACTGAATTGAAAGAATCAGGAATTGGACCTGATTTGTGCAGCTATAACACA
CTAATAAAGGCATACGGAATTGCTGGTATGGTTGAAAGTGCAGCAGATTTGGTTAAGGAA
ATGCGCAAAAATGGAATTGAACCTGATCGAGTAACCTACGCTAACCTAATCAATGCATTA
CGGAAAAATGATATGTTTCTGGAGGCTGTTAAGTGGTCTTTATGGATGAAGCAGATTGGA
TTGTAA

Peptide Sequence

PEP ID

XP_016500205.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like [Nicotiana tabacum]
Sequence

MASLKLSFYVDKSWESKKLKFNVKALNFTDSKCLVPSFLGYGYVGGAFVVNPFCNLKHIR
VSRLETEELETSELSLLDGERVDNFEGDLGNESLVSERLNLGGVSQKGKFNVWKRFRRVK
RVVNNSKYRSSFREKDRNHGMQEKTKIVFDEISEENVIGSLNGVDFDVGNIGSDSSLEHC
NAILKQLESGDDGKALSFFRWMQKNGKLKQNVTAYNLILRVLGRRGDWDGAEAMIKEMSL
ESGCELTYQVFNTLIYACHKKGLVELGAKWFHMMLENRIQPNIATFGMLMALYQKGWNVE
EAEFTFSKMRSLKIMCQSAYSAMLTIYTRMRLYDKAEKIIGFLREDEVILNQENWLVLLN
AYCQQGKLAEAEQVLASMKQSGFSPNIVAYNTLITGYGKISNMRAAQRLFSDLERVGMEP
DETTYRSMIEGWGRADNYEEARRYYVELKRLGHKPNSSNLYTMLNLQVKHGDEEDVVSTV
EEMMHSGSEKSTVLGILLQAYEKLECVHKVPSILRGSLYDHVLRNQISCSSLVMAYVENS
MIDDALKVLREKRWEDALFEDNLYHLLICSCKDLGYPENAVKVFACMPKSYKPNLHIICT
MIDIYSTINDFAEAEKLYLMLKNSDVKLDMITLSVVVRMYVKSGALEEACSVLDAMEKQK
NIVPDTYLLRDMLRIYQRCDKQDKLADLYYKLVKRGVIWDQEMYSCVINCCARALPVDEL
SRLFDEMLKHGFLPNTVTFNVMLDVYGKSRLFKRAREVFSMAKKRGLADVISYNTLIAAY
GRSKDFKNMSSTVKKMHFNGFSVSLEAYNCMLDAYGKEGQMEKFRSILQRLKESGHSSDH
YTYNIMINIYGELGWIEEVANVLTELKESGIGPDLCSYNTLIKAYGIAGMVESAADLVKE
MRKNGIEPDRVTYANLINALRKNDMFLEAVKWSLWMKQIGL

Transcript Sequence

Gene sequence data has not been registered.